PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 27583.9 Da PI: 9.2025 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 62 | 83 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F ++ L+ H+r+H XP_013597068.1 62 PCKVCGKKFWSSKALHGHMRSH 83 5********************9 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 130 | 150 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C+k+F ++ L H+ XP_013597068.1 130 FECEGCKKVFESRQALDGHLC 150 89**************99985 PP | |||||||
3 | zf-C2H2 | 14.2 | 0.00013 | 187 | 209 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k Fs L H+r+H XP_013597068.1 187 HRCDICSKAFSGGQALGGHMRRH 209 79********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.039 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.889 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.29E-8 | 62 | 83 | No hit | No description |
Pfam | PF13912 | 1.7E-5 | 63 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.5E-5 | 63 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.29E-8 | 125 | 149 | No hit | No description |
Pfam | PF13912 | 5.7E-4 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 90 | 130 | 150 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.58E-6 | 186 | 213 | No hit | No description |
Pfam | PF13912 | 1.4E-9 | 187 | 210 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.554 | 187 | 216 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.033 | 187 | 209 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 189 | 211 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MNNNLDLDLN LNPPSAPSNV TPPSHNQTPR RKRTRRTSNN EATSSSSSRR KPDPNAPLIT 60 EPCKVCGKKF WSSKALHGHM RSHPERQWRG INPPPNHQPT APPVSVTAEE GQVLANASTT 120 GSSVGVEGRF ECEGCKKVFE SRQALDGHLC SAILNLNIDP PPPSTPQEIV DEDDKSKSVM 180 VVSGMNHRCD ICSKAFSGGQ ALGGHMRRHW HKDRKEKKQA STGIDLNVPA STNLPGSSSD 240 TLPESSLDLR LRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597068.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597068.1 | 0.0 | PREDICTED: zinc finger protein ZAT2 | ||||
Swissprot | Q9SIJ0 | 2e-71 | ZAT2_ARATH; Zinc finger protein ZAT2 | ||||
TrEMBL | A0A3P6EPG6 | 0.0 | A0A3P6EPG6_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g014900.1 | 1e-125 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20315 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 4e-63 | C2H2-like zinc finger protein |