PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597006.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 393aa    MW: 45842.7 Da    PI: 7.6485
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-17183229148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd + ++ v+++G + W+ Ia+ ++ gR +kqc++rw+++l
   XP_013597006.1 183 KGQWTSEEDRIVIQFVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHL 229
                      799*****************************.*************97 PP
2Myb_DNA-binding52.21.4e-16235277145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
   XP_013597006.1 235 KETWSEEEDRVLIQFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 277
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.803178233IPR017930Myb domain
SuperFamilySSF466893.34E-31181276IPR009057Homeodomain-like
SMARTSM007174.6E-16182231IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-28184236IPR009057Homeodomain-like
CDDcd001672.09E-14186229No hitNo description
PfamPF139217.3E-19186243No hitNo description
PROSITE profilePS5129421.134234284IPR017930Myb domain
SMARTSM007173.6E-16234282IPR001005SANT/Myb domain
CDDcd001673.45E-12237280No hitNo description
Gene3DG3DSA:1.10.10.603.0E-22237282IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MENYVGESGF APLNKTVFTR DQEQMKEENF PFQVVDQSKP TSFLQDFQHL DHDHQFDHHH  60
HHHGSTSSNP LLGIQTRPSC VNSSLFEHCA YQDNMVNMVN KHGPMDMKQD NMMMGMISFD  120
YPPREITKPM NFVMPDEVSC VSADNDCYKS MSFNKTKPIL TRKLSSSSSS SSWKEKKETT  180
LVKGQWTSEE DRIVIQFVEK YGLRKWSHIA QVLPGRIGKQ CRERWHNHLR PDIKKETWSE  240
EEDRVLIQFH KEIGNKWAEI AKRLPGRTEN SIKNHWNATK RRQFSKRKCR SKYPRPSLLQ  300
DYIKSLDLKA LSFSSVPARG RRRESNKKKD FVAVEEENKK NEDDLYGLDR MVPECVFTDD  360
FGFNEKLLVE GCSIDSLLDD LPQPDTDTFA HGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-461812832104C-Myb DNA-Binding Domain
1msf_C8e-461812832104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}.
UniprotTISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597006.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L20.0MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0D3DEX60.0A0A0D3DEX6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F9R30.0A0A3P6F9R3_BRAOL; Uncharacterized protein
STRINGBo7g106240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.10.0myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]