PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | YABBY | ||||||||
Protein Properties | Length: 240aa MW: 27005.6 Da PI: 5.3522 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 239 | 9.9e-74 | 9 | 191 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkee.........lleelkveeenlk 83 ++f+ ++q+C+vqC+fC+til+vsvP+tsl++vvtvrCGhCtsllsvnl+kas +ll++ shlde + +++veee++k XP_013597000.1 9 QLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASfiplHLLTSLSHLDEVPVTYilctekdevAATTDGVEEEAWK 103 78999**********************************************9999999*********976665667777886777899******* PP YABBY 84 snvekeesastsvss.eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++ eke+s++t v+s + +e+ed++v+rv++ v++PPekrqr+Psayn+fikeei+r+ka+nP+++h+eafs+aaknWahfP++ ++ XP_013597000.1 104 VTLEKENSPTTLVTSsDNEDEDEDKDVSRVYQvVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPVQNK 191 *******9999876515569999*********899*************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-59 | 14 | 190 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.11E-9 | 132 | 187 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 6.5E-6 | 138 | 188 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 0.00148 | 146 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MANMTTLNQL FDLPGQICHV QCGFCTTILL VSVPFTSLSM VVTVRCGHCT SLLSVNLMKA 60 SFIPLHLLTS LSHLDEVPVT YILCTEKDEV AATTDGVEEE AWKVTLEKEN SPTTLVTSSD 120 NEDEDEDKDV SRVYQVVNKP PEKRQRAPSA YNCFIKEEIR RLKAQNPSMA HKEAFSLAAK 180 NWAHFPPVQN KRTASDQCFC EEDNNVLLSC NALEDHEVSN NGFRERKAQR HSIWGKSPFE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF195047 | 1e-156 | AF195047.1 Arabidopsis thaliana INNER NO OUTER (INO) mRNA, complete cds. | |||
GenBank | BT026410 | 1e-156 | BT026410.1 Arabidopsis thaliana At1g23420 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597000.1 | 0.0 | PREDICTED: axial regulator YABBY 4 isoform X1 | ||||
Swissprot | Q9LDT3 | 1e-141 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A0D3D747 | 1e-151 | A0A0D3D747_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EBE6 | 1e-151 | A0A3P6EBE6_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g056180.1 | 1e-152 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8044 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-137 | YABBY family protein |
Publications ? help Back to Top | |||
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