PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013596954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NZZ/SPL | ||||||||
Protein Properties | Length: 272aa MW: 29522.7 Da PI: 8.0785 | ||||||||
Description | NZZ/SPL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NOZZLE | 289.9 | 7.6e-89 | 1 | 272 | 1 | 314 |
NOZZLE 1 matslffmstdqnsvrnpnellrntrlvvnssgeirte.tkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgdtssvaa 94 ma+slffm tdq npne+lrnt+ v n s ei te +++ gr pgs t++qk kk lrgmgva+ler +ieee+k+++ a g + XP_013596954.1 1 MAASLFFMPTDQ----NPNEFLRNTYHV-NDSSEIPTEpPQNIHGRIPGSETGNQKPKKQVLRGMGVARLERLRIEEERKNMILAQGGRGA---- 86 9**********9....5**********9.999******88999*****************************************9998876.... PP NOZZLE 95 isntatrlpvpvdrgvvlqgfps.slgssrilcgg...vgsgqvmidpvispwgfvetsatthelssisnpqmynassnnrcdtcfkkkrldgdq 185 s +atr p d+gvvlqgfps g+ + +gg gsgq+ pv spwg v ts+ helssi+ pq+yn s + cd+cfk++r++ XP_013596954.1 87 -SPNATRSP---DPGVVLQGFPSyGTGGPNMSVGGytrNGSGQI---PVYSPWGVVGTST--HELSSIPTPQVYNPSNIH-CDACFKRQRINE-- 169 .6789****...***********767888999998444599998...9**********98..*************99888.*********964.. PP NOZZLE 186 nnvvrsngggfskytmipppmngydeyllqsdhhqrsqgflydqriaraasvsaasasinpyfneatnltgsreefgsvlegnprngsrgvkeye 280 vr+ngggf +ytm+p ++l++d qrsqgflyd+ri+r ++ ++as+ gs+ee+gs prng+r vkey+ XP_013596954.1 170 --EVRANGGGFPQYTMVP--------HFLPPD--QRSQGFLYDHRITRYSASPSAST-----------NQGSMEELGSG---SPRNGTRDVKEYQ 238 ..47*************9........489***..**************984444443...........369******96...************* PP NOZZLE 281 ffpgkydervskvakvaslvgdcspn..tidlslkl 314 ffpg +++ v v+++vgdcsp+ tidlslkl XP_013596954.1 239 FFPGSDGNK--SVSSVSTSVGDCSPDtsTIDLSLKL 272 ****87765..466799********9889******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08744 | 6.7E-89 | 3 | 272 | IPR014855 | Plant transcription factor NOZZLE |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence Send to blast |
MAASLFFMPT DQNPNEFLRN TYHVNDSSEI PTEPPQNIHG RIPGSETGNQ KPKKQVLRGM 60 GVARLERLRI EEERKNMILA QGGRGASPNA TRSPDPGVVL QGFPSYGTGG PNMSVGGYTR 120 NGSGQIPVYS PWGVVGTSTH ELSSIPTPQV YNPSNIHCDA CFKRQRINEE VRANGGGFPQ 180 YTMVPHFLPP DQRSQGFLYD HRITRYSASP SASTNQGSME ELGSGSPRNG TRDVKEYQFF 240 PGSDGNKSVS SVSTSVGDCS PDTSTIDLSL KL |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during microsporogenesis and megasoprogenesis (PubMed:10465788). Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10465788, ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flower buds (PubMed:10465788, PubMed:10500234). Not found in leaves, siliques and stems (PubMed:10465788). Detected in rosette leaves, stem tissue and seedlings (PubMed:10500234). {ECO:0000269|PubMed:10465788, ECO:0000269|PubMed:10500234}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator of sporocyte development (PubMed:10465788). Acts as an adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit TCP transcription factors (PubMed:25378179). Required for nucellus and embryo sac development (PubMed:10500234). Plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes during ovule development (PubMed:12183381). Involved in establishing the prospective chalaza of the ovule and in controlling the cell number and the length of the funiculus, and is required for the development of the integuments (PubMed:10976054). Required, with BEL1, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). Involved in controlling stamen identity (PubMed:19726570). May also regulate the morphology of lateral organs by repressing auxin production (PubMed:18557819). {ECO:0000269|PubMed:10465788, ECO:0000269|PubMed:10500234, ECO:0000269|PubMed:10976054, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:18557819, ECO:0000269|PubMed:19726570, ECO:0000269|PubMed:22786869, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013596954.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor AGAMOUS (PubMed:15254538). Regulated by ATXR3/SDG2 via chromatin methylation (PubMed:21037105). Triggered by TGA9 AND TGA10 in anthers (PubMed:20805327). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:21037105}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596954.1 | 0.0 | PREDICTED: uncharacterized protein LOC106305129 | ||||
Swissprot | O81836 | 9e-80 | SPL_ARATH; Protein SPOROCYTELESS | ||||
TrEMBL | A0A0D3DGD7 | 0.0 | A0A0D3DGD7_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g111360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13435 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27330.1 | 4e-74 | sporocyteless (SPL) |