PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596928.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 572aa    MW: 65390.4 Da    PI: 7.0622
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.87.4e-22125221198
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f kvl+ sd++k+g +vl k++a e+    +    s++++ +d +g +W++k++ r++++r+++t+GW+eF+k ++L +gD +vF   + +++e 
  XP_013596928.1 125 FTKVLSASDTNKKGSFVLNKRHAIEClplLLT--PSQEVIAKDIHGHEWNFKHTLRGTPQRHLFTSGWNEFAKGKDLVVGDCFVFL--RGENGES 215
                     89*************************86444..3559************************************************..3478888 PP

                     EEEEE- CS
              B3  93 vvkvfr 98 
                     +v++++
  XP_013596928.1 216 RVGIRK 221
                     999987 PP
2Auxin_resp86.64.7e-29248327183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a +a++ k++F v+Y+Pr+  s+F v++ek+ + +++k+svG+Rf m+fe+ d+se+r++Gt+vgv+d+++ +W+nS+WrsL+
  XP_013596928.1 248 ALNAIERKCMFVVFYKPRS--SQFLVNFEKFIDGVNRKFSVGSRFLMKFEGRDFSEIRYYGTIVGVKDFST-HWKNSEWRSLE 327
                     6789**************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-32116227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-25122222IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-22124221No hitNo description
PfamPF023627.7E-19125221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816125223IPR003340B3 DNA binding domain
SMARTSM010191.2E-17125223IPR003340B3 DNA binding domain
PfamPF065071.4E-25248326IPR010525Auxin response factor
PROSITE profilePS5174515.178461543IPR000270PB1 domain
SuperFamilySSF542772.35E-5464536No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MASDQIMHVQ PESLATDGTN NYLYNQLWKL CAGPLFHLPK VGEKINYFPQ GHIEQLVTSM  60
NDELCQLKPI FDIPSKICCN VFSIKLKVET TTDEIYAEIS LLPDTSEVEI PTPKPENNIQ  120
NINYFTKVLS ASDTNKKGSF VLNKRHAIEC LPLLLTPSQE VIAKDIHGHE WNFKHTLRGT  180
PQRHLFTSGW NEFAKGKDLV VGDCFVFLRG ENGESRVGIR KSAHHQQHNI PSPVISKQSM  240
HHGVVATALN AIERKCMFVV FYKPRSSQFL VNFEKFIDGV NRKFSVGSRF LMKFEGRDFS  300
EIRYYGTIVG VKDFSTHWKN SEWRSLEVQW DEAAIISRPD KVSPWEIEPL THSSNIPKSV  360
FLKNKRQSEI NDFGQEIGQT SIQSSMSYSF PSMSKPNYNE QMVQAMKETS TTTEAASYRL  420
FGVDLTFPAK TKDPVQPTHS YKKSKISKIF EEEKVDQIQT KTHTKVCMEG AAERTMDLTI  480
FDGYNQLIDE LERLFDIKDK LHMHNQWKIV FINADGNMML LGDDPWPKFC NTAKEIFIYS  540
EHDAKRGNAD NKFAEGDPRL ATTILPPDVN NN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1132035016355Auxin response factor 1
4ldw_A1e-1132035016355Auxin response factor 1
4ldw_B1e-1132035016355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596928.10.0PREDICTED: auxin response factor 20-like
SwissprotQ9C7I90.0ARFT_ARATH; Auxin response factor 20
TrEMBLA0A3P6F2Q50.0A0A3P6F2Q5_BRAOL; Auxin response factor (Fragment)
STRINGBo7g067390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35240.10.0auxin response factor 20