PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596914.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 664aa    MW: 72890 Da    PI: 7.0009
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094564931954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  XP_013596914.1 456 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 493
                     664559******************************88 PP

2BELL122.12.4e-39314385172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  XP_013596914.1 314 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAAIPYTALAQKAMSRHFRCLKDAVAAQL 385
                     589******************************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-75240383IPR006563POX domain
PfamPF075265.0E-51245382IPR006563POX domain
PROSITE profilePS5007112.568434497IPR001356Homeobox domain
CDDcd000864.41E-12437498No hitNo description
SMARTSM003891.2E-9437501IPR001356Homeobox domain
SuperFamilySSF466892.91E-17438504IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29440503IPR009057Homeodomain-like
PfamPF059203.3E-18454493IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MSQDYHHQQY QGGFFSFSNG FNRSDSPNLT HQEKQEHQRV LEMDEESSVA RSGIPVYEPA  60
GMLSEMFNFH RSSGGGGGGG GGGGDFDHSQ SFPSNRQLLE QQHQNIPAMN SAAGMQLFLP  120
QQPPSTRSHH GSSTLHMLLP NPSHHQGYTN TMSMHQLPHQ QLTWQSSSDH HHHNIGTVHV  180
ENSGGQGLSL SLSSSLEAAV KAEEYRKFYY GSNLSSHHQY NEVSNHFLSS PAAASSSSSI  240
GAINILRNSR YTKVAQELLE EFCTVGRGFS KKNKPKNNSN PNTSGGDGSS SGGAGASPSS  300
AGASKDHPPL SASDRIEHQR RKVKLLTMLE EVDRRYNHYC EQMQMVVNSF DIVMGHGAAI  360
PYTALAQKAM SRHFRCLKDA VAAQLRQSCE LLGEKDAAGL SSSGLTKGDT PRLRFLEQSL  420
RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR  480
NQVSNWFINA RVRLWKPMVE EMYQQESKER EENEQEDQET KNNSSNDKST KSNNNESNFT  540
AVRTTSQTPT TAAQSAATPP DAGHRLRSAA DINAYENDPS SFSHSNAAAA VVSSYGGSTA  600
FSAIATCQQG VGGFDDADMD GDNNVIRFGT TNPTGDVSLT LGLRHAGNIP DKNASFCARD  660
FGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17443500158Homeobox protein Meis1
4xrs_B7e-17443500158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596914.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A0D3A1F70.0A0A0D3A1F7_BRAOL; Uncharacterized protein
STRINGBo1g005330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]