PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 664aa MW: 72890 Da PI: 7.0009 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 456 | 493 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_013596914.1 456 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 493 664559******************************88 PP | |||||||
2 | BELL | 122.1 | 2.4e-39 | 314 | 385 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ XP_013596914.1 314 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAAIPYTALAQKAMSRHFRCLKDAVAAQL 385 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.0E-75 | 240 | 383 | IPR006563 | POX domain |
Pfam | PF07526 | 5.0E-51 | 245 | 382 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 434 | 497 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.41E-12 | 437 | 498 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 437 | 501 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-17 | 438 | 504 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-29 | 440 | 503 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.3E-18 | 454 | 493 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MSQDYHHQQY QGGFFSFSNG FNRSDSPNLT HQEKQEHQRV LEMDEESSVA RSGIPVYEPA 60 GMLSEMFNFH RSSGGGGGGG GGGGDFDHSQ SFPSNRQLLE QQHQNIPAMN SAAGMQLFLP 120 QQPPSTRSHH GSSTLHMLLP NPSHHQGYTN TMSMHQLPHQ QLTWQSSSDH HHHNIGTVHV 180 ENSGGQGLSL SLSSSLEAAV KAEEYRKFYY GSNLSSHHQY NEVSNHFLSS PAAASSSSSI 240 GAINILRNSR YTKVAQELLE EFCTVGRGFS KKNKPKNNSN PNTSGGDGSS SGGAGASPSS 300 AGASKDHPPL SASDRIEHQR RKVKLLTMLE EVDRRYNHYC EQMQMVVNSF DIVMGHGAAI 360 PYTALAQKAM SRHFRCLKDA VAAQLRQSCE LLGEKDAAGL SSSGLTKGDT PRLRFLEQSL 420 RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR 480 NQVSNWFINA RVRLWKPMVE EMYQQESKER EENEQEDQET KNNSSNDKST KSNNNESNFT 540 AVRTTSQTPT TAAQSAATPP DAGHRLRSAA DINAYENDPS SFSHSNAAAA VVSSYGGSTA 600 FSAIATCQQG VGGFDDADMD GDNNVIRFGT TNPTGDVSLT LGLRHAGNIP DKNASFCARD 660 FGGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 7e-17 | 443 | 500 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-17 | 443 | 500 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596914.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596914.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 2 | ||||
Swissprot | Q9SW80 | 0.0 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A0D3A1F7 | 0.0 | A0A0D3A1F7_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g005330.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 0.0 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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