PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596783.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 159aa    MW: 17696 Da    PI: 7.5061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1685134154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                     +++kGVr+++ +g+W AeI+dp     +  +r +lg+f ta++Aa+a++ a  kl 
  XP_013596783.1  85 KKHKGVRQKP-SGKWSAEIWDP-----SlqRRRWLGTFPTAKMAAEAYDDAESKLV 134
                     589*****99.7*********9.....445********************998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-2286150IPR001471AP2/ERF domain
PfamPF008474.0E-986134IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1486138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-2086138IPR001471AP2/ERF domain
PROSITE profilePS5103218.6186147IPR001471AP2/ERF domain
PRINTSPR003674.3E-68798IPR001471AP2/ERF domain
CDDcd000187.65E-2289139No hitNo description
PRINTSPR003674.3E-6109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDHSENIPSC DHKPPRLITR DQEHVIMVSA LRQVISNVRV ENSSSNSVTC EALHQPLDAG  60
PCPLCNITGC LGCAFPVHEE IEKEKKHKGV RQKPSGKWSA EIWDPSLQRR RWLGTFPTAK  120
MAAEAYDDAE SKLVKRKAAR SGTMNGDEPS IHREDEGGK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596783.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596783.11e-116PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC96e-60EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A0D3DGB21e-115A0A0D3DGB2_BRAOL; Uncharacterized protein
STRINGBo7g111110.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.12e-48ERF family protein