PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596747.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25253.1 Da    PI: 7.9588
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.6e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++g+ly+++s
  XP_013596747.1  9 KRIENVTSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGRLYDFAS 59
                    79***********************************************86 PP
2K-box55.23.1e-198417710100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLrkklee 100
                     +++  ++ ++e+ak  ++ie Lq   R+l+G+dL+s+s++eL+++  +Leksl+ +Rs+K +l  + ie+l+     eke+ +e+ +Lr+++ee
  XP_013596747.1  84 KQQFVQEVKNEMAKTLDQIELLQLHCRKLMGQDLDSCSVEELKEITIKLEKSLTIVRSRKAKLNEDTIEKLKAEisgEKEVLNETSSLRQMFEE 177
                     55667999***************999**********************************************754459999999999*999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-29323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-30370IPR002100Transcription factor, MADS-box
CDDcd002651.70E-40369No hitNo description
PfamPF003193.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1885175IPR002487Transcription factor, K-box
PROSITE profilePS5129711.89588181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVRGKIEIKR IENVTSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS  60
DMQKMMERYD IHRSEYFGAE RLQKQQFVQE VKNEMAKTLD QIELLQLHCR KLMGQDLDSC  120
SVEELKEITI KLEKSLTIVR SRKAKLNEDT IEKLKAEISG EKEVLNETSS LRQMFEEPTL  180
WMHSRSLESE MSGPSCGYGN MNISDVKTEL SIGLPESRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-19169169Myocyte-specific enhancer factor 2B
1tqe_Q5e-19169169Myocyte-specific enhancer factor 2B
1tqe_R5e-19169169Myocyte-specific enhancer factor 2B
1tqe_S5e-19169169Myocyte-specific enhancer factor 2B
5f28_A6e-19169169MEF2C
5f28_B6e-19169169MEF2C
5f28_C6e-19169169MEF2C
5f28_D6e-19169169MEF2C
6c9l_A5e-19169169Myocyte-specific enhancer factor 2B
6c9l_B5e-19169169Myocyte-specific enhancer factor 2B
6c9l_C5e-19169169Myocyte-specific enhancer factor 2B
6c9l_D5e-19169169Myocyte-specific enhancer factor 2B
6c9l_E5e-19169169Myocyte-specific enhancer factor 2B
6c9l_F5e-19169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893092e-65AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596747.11e-160PREDICTED: MADS-box transcription factor 23-like isoform X3
SwissprotQ9FLH56e-71AGL72_ARATH; MADS-box protein AGL72
TrEMBLA0A397KZK01e-135A0A397KZK0_BRACM; Uncharacterized protein
STRINGBo8g050720.11e-130(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.13e-67MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]