PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013596650.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 284aa MW: 32176.9 Da PI: 8.4358

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013596650.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.1	3.8e-33	141	198	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers +dp++v++tYeg+H h+ XP_013596650.1 141 EDGYRWRKYGQKAVKNSPYPRSYYRCTAQKCNVKKRVERSFQDPSIVITTYEGKHYHP 198 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.5E-35	125	200	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-29	132	200	IPR003657	WRKY domain
PROSITE profile	PS50811	32.064	135	200	IPR003657	WRKY domain
SMART	SM00774	9.6E-38	140	199	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	141	198	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDDQVDHKNT SLDEVIFTSV ADCLQSSLVM DYNSLEKAFK FSPYNYPCQP ISASNMGQIV 60 NYPYLNLTPI SPIVSSSSNE ADPKENVGDK SGPMENHNDG DQHGVGETSK QLTKQGKGKG 120 EKKEREARVA FMTKSEVDQL EDGYRWRKYG QKAVKNSPYP RSYYRCTAQK CNVKKRVERS 180 FQDPSIVITT YEGKHYHPIP STLRGPMVGE HLLGHHGSGI LHSFKRYHQQ FLMKNQHPVN 240 YQSAGTVTYQ QRHGDSSNYS NHQQVVDCGL LQDIVPSKFL KHES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-28	130	201	7	78	Probable WRKY transcription factor 4
2lex_A	4e-28	130	201	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00168	DAP	Transfer from AT1G29860	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013596650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593152	0.0	KM593152.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY70) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596650.1	0.0	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q93WV4	1e-130	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A0D3D5W5	0.0	A0A0D3D5W5_BRAOL; Uncharacterized protein
STRING	Bo7g044930.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13911	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-120	WRKY DNA-binding protein 71

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]