PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 270aa MW: 30090.2 Da PI: 10.4017 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.2 | 4.7e-15 | 201 | 254 | 5 | 58 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r +r++kNRe+A rsR+RK+a++ eLe kv+ L+aeN +L + ++ k e+++ XP_013596590.1 201 RRNKRMIKNRESAARSRARKQAYTNELELKVAHLKAENARLMRQQDQVKIEAEN 254 699***************************************999999988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.1E-12 | 195 | 261 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.932 | 199 | 253 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-11 | 201 | 248 | No hit | No description |
Pfam | PF00170 | 1.6E-12 | 201 | 253 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 8.88E-25 | 201 | 247 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.7E-14 | 201 | 253 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 204 | 219 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MLFSANHQRN NRVSATSKNK TLNKVSSISS SSSPSHPQDS QSQKKSLVTM EDVWKDINLG 60 SIHSQHPRGN HEPRFGSHNH HNQNSNSIFQ DFLNRPLNQE PTIPTSLTIS SSSNGDTTTV 120 TALLSSSPLE PPATVLSLNS GAGFEFLDNQ DPLVTPNYNL HSHNHLTNIP SFNTSFEALD 180 TPTCFGKKRG QESNEEGSGN RRNKRMIKNR ESAARSRARK QAYTNELELK VAHLKAENAR 240 LMRQQDQVKI EAENQQPKKN TLQRASTAPF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596590.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596590.1 | 0.0 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 1e-127 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A3P6EUA5 | 0.0 | A0A3P6EUA5_BRAOL; Uncharacterized protein | ||||
STRING | Bra017735.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-109 | bZIP family protein |