PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 22099.1 Da PI: 9.9648 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+ksF + L H+++H XP_013596417.1 4 HKCKLCSKSFCNGRALGGHMKSH 26 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.868 | 4 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.2E-6 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HTPTRKKLLG DSVYSSSSSS DGKTLAYGLR 60 ENPRKSCRVF NPDPESSTVY NSETETEPES VEPVRKRGKA EVSKKKRVLK NSSESGKKQK 120 RSKSNSDESP EPASSVSDGS PEQDLAMCLM MLSRDSREVK LKKPIIEAEK RHVPELRRCT 180 IDLNLPPPQE SDVVAVVSAI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 119 | RKRGKAEVSKKKRVLKNSSESGKKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596417.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596417.1 | 1e-143 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A0D3DEF9 | 1e-141 | A0A0D3DEF9_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g104570.1 | 1e-142 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9510 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16610.1 | 2e-83 | C2H2-like zinc finger protein |