PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 325aa MW: 37026.2 Da PI: 5.4651 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l +++ lG g+W++ ar+ g++Rt+k+c++rw++yl XP_013596410.1 28 RGPWTVEEDFKLSNYISTLGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.9e-16 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_013596410.1 81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.673 | 23 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.02E-30 | 25 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-14 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.18E-11 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 23.173 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-15 | 81 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.53E-7 | 101 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDGKRSFEIN KNMGDFENNV DDEMDLRRGP WTVEEDFKLS NYISTLGEGR WNSLARCAGL 60 KRTGKSCRLR WLNYLRPDIR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN 120 YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA ASASSTTGSA AKFCVTTTTD 180 QFVITSYDDG ANNNNTSIDH LGLTNNPNGY VTSGTSSVTV SPASGLTEYN IGSEVGKIIT 240 SFDPDQSLVG PQILLPSQNY LDDKSGLLNG GLGDMQEQSY PNLFENINGM IPSYSDSFWN 300 IGSDEDFWLL QQQQQQQQLL NNRSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-25 | 25 | 122 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596410.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM975657 | 0.0 | KM975657.1 Brassica napus MYB transcription factor 78-2.1 (MYB78-2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596410.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB108 | ||||
Refseq | XP_013647364.1 | 0.0 | transcription factor MYB78-like | ||||
Swissprot | Q9FGY3 | 1e-145 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A3P6F016 | 0.0 | A0A3P6F016_BRAOL; Uncharacterized protein | ||||
STRING | Bra010021.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bra010022.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-127 | myb domain protein 78 |
Publications ? help Back to Top | |||
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