PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013596363.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 376aa MW: 42518.4 Da PI: 7.7612 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.4 | 4.4e-30 | 219 | 273 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_013596363.1 219 KQRRCWSHELHRRFLNALKQLGGPH-ATPKQIRELMKVDGLTNDEVKSHLQKYRLH 273 79*********************98.****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.374 | 216 | 275 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-28 | 217 | 276 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.95E-19 | 217 | 276 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-26 | 219 | 273 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-7 | 221 | 271 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MIKSLSNMMK YNEKREKCCE YIEALEEERR KINVFQRELP LCLELVTRAI EAYKKEISGT 60 TTDTLYGQPE CSEQTTGECG PVLDLFLPVK QSSASTDEEE EEVYEDDDVE HESHDTGIDF 120 VDKNMKSEWL KSVQLWNQPE AVPVSKSERS QQETQTVVEP IKENDNGAGS HQPPCYEMSN 180 EKNDYIISLA TTSSGSGRQK TEAERGGSGG RSSRRGQRKQ RRCWSHELHR RFLNALKQLG 240 GPHATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSQT IPNNRDSQTQ HFVVVGGIWV 300 PQANHSKANA VASRKTTTGI YGPMVSPLPS EWPSHSNFGR EISEERSRCS NKGIVRCSSP 360 AMSSSTRTKT KNSKLS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013596363.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596363.1 | 0.0 | PREDICTED: probable transcription factor KAN3 isoform X2 | ||||
Swissprot | Q9LS00 | 1e-174 | HHO1_ARATH; Transcription factor HHO1 | ||||
TrEMBL | A0A0D3DAU8 | 0.0 | A0A0D3DAU8_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g082060.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G25790.1 | 1e-163 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|