PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596362.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 377aa    MW: 42617.5 Da    PI: 7.7612
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.6e-32219274156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W++eLH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_013596362.1 219 KQRRCWSHELHRRFLNALKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 274
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.944216276IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-28217277IPR009057Homeodomain-like
SuperFamilySSF466891.05E-17217277IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-27219274IPR006447Myb domain, plants
PfamPF002497.0E-7221272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MIKSLSNMMK YNEKREKCCE YIEALEEERR KINVFQRELP LCLELVTRAI EAYKKEISGT  60
TTDTLYGQPE CSEQTTGECG PVLDLFLPVK QSSASTDEEE EEVYEDDDVE HESHDTGIDF  120
VDKNMKSEWL KSVQLWNQPE AVPVSKSERS QQETQTVVEP IKENDNGAGS HQPPCYEMSN  180
EKNDYIISLA TTSSGSGRQK TEAERGGSGG RSSRRGQRKQ RRCWSHELHR RFLNALKQLG  240
GPHVATPKQI RELMKVDGLT NDEVKSHLQK YRLHTRRPSQ TIPNNRDSQT QHFVVVGGIW  300
VPQANHSKAN AVASRKTTTG IYGPMVSPLP SEWPSHSNFG REISEERSRC SNKGIVRCSS  360
PAMSSSTRTK TKNSKLS
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596362.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596362.10.0PREDICTED: probable transcription factor KAN3 isoform X1
SwissprotQ9LS001e-176HHO1_ARATH; Transcription factor HHO1
TrEMBLA0A0D3DAU80.0A0A0D3DAU8_BRAOL; Uncharacterized protein
STRINGBo7g082060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-166G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]