PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 172aa MW: 20085.2 Da PI: 5.6613 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.6 | 1.7e-15 | 80 | 138 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK+ ++eL v L eN++L ++l++l++ +k+ +e+ XP_013596330.1 80 RKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHEKVLQEN 138 689***************************************************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.4E-14 | 76 | 140 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.3E-11 | 78 | 133 | No hit | No description |
PROSITE profile | PS50217 | 10.932 | 78 | 141 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.4E-14 | 80 | 138 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.13E-13 | 80 | 130 | No hit | No description |
CDD | cd14702 | 2.91E-19 | 81 | 131 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 83 | 98 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MQPQTDVFSL QNYLNSSIPS PYPSHFQISS PFPINGQNPN SFYGFQNATN NPQSMGLSSN 60 NSTSDEAEEQ QTDKNIINER KQRRMISNRE SARRSRMRKQ RHLDELWSQV MWLRIENHQL 120 LDKLNNLSES HEKVLQENAQ LKEETSDLKQ VISDMQIQSP FSCFRDDIIP IE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 99 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00389 | DAP | Transfer from AT3G30530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016878 | 1e-176 | AB016878.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP15. | |||
GenBank | CP002686 | 1e-176 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596330.1 | 1e-124 | PREDICTED: basic leucine zipper 43-like | ||||
Refseq | XP_013705617.1 | 1e-124 | basic leucine zipper 43 | ||||
Swissprot | Q9FMC2 | 5e-67 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A0D3DBM2 | 1e-122 | A0A0D3DBM2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6RQE2 | 1e-122 | A0A3N6RQE2_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6E3X0 | 1e-122 | A0A3P6E3X0_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g088760.1 | 1e-123 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3112 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30530.1 | 1e-110 | basic leucine-zipper 42 |
Publications ? help Back to Top | |||
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