PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 29040.7 Da PI: 7.7686 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63 | 5.9e-20 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + XP_013596209.1 13 KGPWSPEEDDLLQKLVEKHGPKNWSLISKSIP-GRSGKSCRLRWCNQ 58 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 68 | 109 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++eEde +v+a++++G++ W+t++r + gRt++ +k++w++ XP_013596209.1 68 FSPEEDEMIVRAHARYGNK-WATVSRLLS-GRTDNAVKNHWNST 109 89*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.549 | 8 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.28E-31 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-18 | 12 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-20 | 13 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-26 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.71E-17 | 15 | 57 | No hit | No description |
SMART | SM00717 | 1.4E-13 | 64 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.033 | 65 | 114 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.67E-11 | 68 | 110 | No hit | No description |
Pfam | PF00249 | 1.3E-13 | 68 | 109 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MSGPTRKNME RIKGPWSPEE DDLLQKLVEK HGPKNWSLIS KSIPGRSGKS CRLRWCNQLS 60 PEVEHRGFSP EEDEMIVRAH ARYGNKWATV SRLLSGRTDN AVKNHWNSTL KRKCTPEGHD 120 GNLGEEQPSK RAASGGVCTG LYMSPGSPAG SDVSASDGGD PPTYLSLSLP WNNGCDTETV 180 GINGDTVIDG GYTAELFPVR KKEERGIVGG EFMTAVQEMV RTEVRSYMAE LQRGNVGGGL 240 CIPQSVNSCR VGFREFIVNQ IGKME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-40 | 10 | 114 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596209.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966742 | 1e-104 | KC966742.1 Brassica napus MYB transcription factor 73 (MYB73.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596209.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-141 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A0D3DI47 | 0.0 | A0A0D3DI47_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EUG6 | 0.0 | A0A3P6EUG6_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g118450.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-143 | myb domain protein 73 |
Publications ? help Back to Top | |||
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