PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596112.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 280aa    MW: 31208.1 Da    PI: 8.0189
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.66e-332377155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  XP_013596112.1 23 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 77
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-322081IPR009057Homeodomain-like
PROSITE profilePS5129412.2852080IPR017930Myb domain
SuperFamilySSF466891.97E-162380IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-242378IPR006447Myb domain, plants
PfamPF002491.6E-92576IPR001005SANT/Myb domain
PfamPF143794.1E-19128173IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MERVNLGALG YENGGVMMTR DPKPRLRWTA DLHDRFVDAV AKLGGADKAT PKSVLKLMGL  60
KGLTLYHLKS HLQKYRLGQQ QAKKQNLTEQ NKENAGSSYV HFDNCSQGGI SNESRFDNHL  120
RQSGNVPFAD TLRHQVDAQQ RFQEQLEVQK KLQMRMEAQG KYLLTLLEKA QKSMPCGGNG  180
AETDKGQFSD FNLALSGLVG NDHKNIKAGL ITDISHVNGD LTDNFRLCGE RDTGETEDAC  240
VKPESGFVHF DLNSKDGYDL LNSGKYGIEM KPNVIADRHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596112.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937770.0AB493777.1 Arabidopsis thaliana At5g45580 mRNA for hypothetical protein, partial cds, clone: RAAt5g45580.
GenBankBT0120030.0BT012003.1 Arabidopsis thaliana At5g45580 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596112.10.0PREDICTED: myb family transcription factor APL
RefseqXP_013669754.10.0myb family transcription factor PHL11-like
SwissprotC0SVS40.0PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A0D3D9A10.0A0A0D3D9A1_BRAOL; Uncharacterized protein
STRINGBo7g072630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124952530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-174G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]