PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596096.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRF | ||||||||
Protein Properties | Length: 405aa MW: 44429.1 Da PI: 6.8931 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.1 | 3.7e-24 | 159 | 204 | 1 | 46 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d+ep+rC+RtDGKkWRCsr++++++k+CErH h++r rsrk++e+s XP_013596096.1 159 DMEPWRCKRTDGKKWRCSRNAVPDQKYCERHAHKSRPRSRKHVETS 204 79*****************************************975 PP | |||||||
2 | QLQ | 49.7 | 1.1e-17 | 93 | 127 | 1 | 35 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 saF+ aQ+++L++Q ++K+++a++PvP+eLl + XP_013596096.1 93 SAFSEAQWHELERQRNIFKCMMASLPVPSELLTPF 127 89*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.0E-11 | 93 | 129 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.3E-11 | 94 | 126 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.563 | 94 | 129 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.325 | 159 | 203 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.2E-19 | 160 | 202 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MTTRAERNKE DFVGGFGFGV VEHSHKDVML PSHHYHSYSS PSSASFCYCS NGAADPIFSA 60 SNTSSLGEMF SLEGSNASAA VSVADPFFTL TSSAFSEAQW HELERQRNIF KCMMASLPVP 120 SELLTPFSMN PSHTNNQDVA RGGSLKLGIA SNASNNTADM EPWRCKRTDG KKWRCSRNAV 180 PDQKYCERHA HKSRPRSRKH VETSPHSHHS ETRTTKNVAS QFATPYPQFY GPPLSQFSAV 240 STLPPASSSY DHHPNSGLRW LMKEGDSIAT LNPEIHESAQ LKVGSSRELK RGFEYDLNYI 300 QNEPLVDQRF GALEGLLSPN RQETRRFLVE GEQDEAMGSS LTLSMAGGME EGEGRSQHQW 360 ISHEGPSWLC STTPGGPLAE ALCLGVPNNP STSTTTTSSC SRSSS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269|PubMed:12974814}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596096.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596096.1 | 0.0 | PREDICTED: growth-regulating factor 8-like isoform X3 | ||||
Swissprot | Q9SU44 | 1e-175 | GRF8_ARATH; Growth-regulating factor 8 | ||||
TrEMBL | A0A0D3DFT6 | 0.0 | A0A0D3DFT6_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g109350.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 1e-172 | growth-regulating factor 8 |
Publications ? help Back to Top | |||
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