PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596079.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 482aa    MW: 52642.4 Da    PI: 8.4479
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33233289259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers+ d++v+ei+Y+g+H he
  XP_013596079.1 233 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSQ-DGQVTEIIYKGQHSHE 289
                     8****************************************.***************8 PP
2WRKY1053.9e-33390448159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  XP_013596079.1 390 LDDGFKWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAASDPKAVVTTYEGKHNHD 448
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-29224291IPR003657WRKY domain
PROSITE profilePS5081123.629227291IPR003657WRKY domain
SuperFamilySSF1182909.68E-26230291IPR003657WRKY domain
SMARTSM007741.6E-36232290IPR003657WRKY domain
PfamPF031067.4E-26233288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-36375450IPR003657WRKY domain
SuperFamilySSF1182902.22E-29382450IPR003657WRKY domain
PROSITE profilePS5081137.665385450IPR003657WRKY domain
SMARTSM007747.4E-39390449IPR003657WRKY domain
PfamPF031068.0E-26391448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MADKEEQEVE HQQKQPSTLK SSTGAPSRPT ISLPPRPFGE MFFSGGLGFS PGPMTLVSNL  60
FSDPDELKTF SQLLAGAMAS PAAAVAAAAV VATAHQTPVS SVGGSGGDVD PRFKQNRPTG  120
LMIAQPPAMF TVPPGLSPAT LLDSPSFFGL FSPIQGAFGM THQQALAQVT AQAVQGNGVQ  180
IQSQSEYPSS TQQQETSSEP MSQLPALAQR DTVEVSVYEH RPSQPQNADK PADDGYNWRK  240
YGQKQVKGSD FPRSYYKCTH PACPVKKKVE RSQDGQVTEI IYKGQHSHEP PQNKTKRDNT  300
GSSRSSDVAT QFHTSNSGLN KNKRDQETSQ VTTTTTEQMC DASDSEGTSV EPDPKRRNME  360
VRVTEPVTST QRTVTEPRII VQTTSEVDLL DDGFKWRKYG QKVVKGNPYP RSYYKCTTPG  420
CGVRKHVERA ASDPKAVVTT YEGKHNHDVP AARNSSHQLR PNNNLHNTTV DNMNQEQRVA  480
RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-44233451878Probable WRKY transcription factor 4
2lex_A3e-44233451878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596079.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931530.0KM593153.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596079.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0A7RE740.0A0A0A7RE74_BRAOC; WRKY72 protein
TrEMBLA0A0D3DAK50.0A0A0D3DAK5_BRAOL; Uncharacterized protein
STRINGBo7g081130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]