PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013595966.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 329aa MW: 36984.8 Da PI: 5.898

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013595966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6e-32	173	227	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fveav+qLGG e+A Pk++l++mkv+gLt++hvkSHLQkYR+ XP_013595966.1 173 KGRVRWTPELHETFVEAVNQLGGMENAKPKAVLKHMKVQGLTIYHVKSHLQKYRT 227 569***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.087	170	230	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-30	171	228	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-17	172	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.9E-23	173	227	IPR006447	Myb domain, plants
Pfam	PF00249	7.5E-11	175	226	IPR001005	SANT/Myb domain
Pfam	PF14379	7.1E-19	259	304	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
METRPFRSMS SLALTSSVPN PSVNADISFS SEHNQSMASP YHLLSANGGA VGHIMASHIG 60 SSSDTPFISE ILDWDHPDLF DFPLDIPIQT NQMDDILAEL DEELITDDEN PLMYALLNDL 120 FLDTSSTSAA SKVQEPTMQS QIQQPQVVLH QTSPIVRTVS SNSFTSNNTA AAKGRVRWTP 180 ELHETFVEAV NQLGGMENAK PKAVLKHMKV QGLTIYHVKS HLQKYRTARH VPEPSEAGWR 240 EKKLTPVEHV TSLDTKSGMY ISEALRIQME VQKQLHEQLE IQRKMQLQIE KQGKALVMMI 300 EKQNMEFGKP EQEEEAEADS RRSKRPRKG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	172	230	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	172	230	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	172	230	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	172	230	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	172	230	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	172	230	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	172	230	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	172	230	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013595966.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595966.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein PHR1-LIKE 1
Swissprot	Q8GXC2	1e-103	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	A0A0D3D2A1	0.0	A0A0D3D2A1_BRAOL; Uncharacterized protein
STRING	Bo7g003580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	1e-103	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]