PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595940.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 98aa    MW: 11307.8 Da    PI: 8.89
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-07952344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W   a+ +g +++++++k ++
   XP_013595940.1  9 SWTSKQNKMFERALAVYDNDtpdRWQNLAKAVG-NKSAEEVKRHY 52
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.214256IPR017877Myb-like domain
SMARTSM007176.5E-5658IPR001005SANT/Myb domain
SuperFamilySSF466896.5E-12863IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-4958IPR009057Homeodomain-like
CDDcd001673.97E-41652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASSSMSSSW TSKQNKMFER ALAVYDNDTP DRWQNLAKAV GNKSAEEVKR HYDILVEDLV  60
NIEQDLVPLP KYKTVDVGNK SRGINDYDLR LMKNMRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-28198193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893566e-88AC189356.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595940.12e-67PREDICTED: protein RADIALIS-like 5
SwissprotQ8GW757e-55RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A0D3D8104e-66A0A0D3D810_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DZX04e-66A0A3P6DZX0_BRAOL; Uncharacterized protein
STRINGBo7g062280.16e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.18e-57RAD-like 5