PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013595823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 374aa MW: 40975.1 Da PI: 9.8427 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57.8 | 2.9e-18 | 19 | 109 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + XP_013595823.1 19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERGRLE 109 **************666666665445556666666666777669999***************************************99743 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.795 | 11 | 94 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.0E-13 | 18 | 109 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MADQSGGLGL TREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASASSSSA 120 AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFDVVESKT HPSSTAATAI TAAVAAAAAE 180 TGSGNGSGGG LHIPKLIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRTLLLPPP 240 PQPSFHAQPI LPTVDTSPAK RRRTKPTTAA GTSGGGGGGN AEMEEAESVV AAALSRSASV 300 IANAFRESEE RQDRRHKEVM SLKERRLKIE ESNVEMNREG MSGLVEAINK LASSMFALAS 360 STSSHNNQHQ GGPS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013595823.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595823.1 | 0.0 | PREDICTED: uncharacterized protein LOC106304000 isoform X2 | ||||
TrEMBL | A0A0D3D5M2 | 0.0 | A0A0D3D5M2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ELZ1 | 0.0 | A0A3P6ELZ1_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g041030.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31310.1 | 1e-112 | Trihelix family protein |