PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013595821.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 386aa MW: 42239.2 Da PI: 9.3247

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013595821.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.7	3e-18	19	109	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + XP_013595821.1 19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERGRLE 109 ************666666665445556666666666777669999*************************************99743 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.795	11	94	IPR017877	Myb-like domain
Pfam	PF13837	1.1E-13	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MADQSGGLGL TREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASASSSSA 120 AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFDVVESKT HPSSTAATAI TAAVAAAAAE 180 TGSGNGSGGG LHIPKLIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRTLLLPPP 240 PQPSFHAQPI LPTKDSSSDS DTSEHSDTSP AKRRRTKPTT AAGTSGGGGG GNAEMEEAES 300 VVAAALSRSA SVIANAFRES EERQDRRHKE VMSLKERRLK IEESNVEMNR EGMSGLVEAI 360 NKLASSMFAL ASSTSSHNNQ HQGGPS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MADQSGGLGL TREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASASSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFDVVESKT HPSSTAATAI TAAVAAAAAE  180
TGSGNGSGGG LHIPKLIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRTLLLPPP  240
PQPSFHAQPI LPTKDSSSDS DTSEHSDTSP AKRRRTKPTT AAGTSGGGGG GNAEMEEAES  300
VVAAALSRSA SVIANAFRES EERQDRRHKE VMSLKERRLK IEESNVEMNR EGMSGLVEAI  360
NKLASSMFAL ASSTSSHNNQ HQGGPS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013595821.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595821.1	0.0	PREDICTED: uncharacterized protein LOC106304000 isoform X1
TrEMBL	A0A0D3D5M2	0.0	A0A0D3D5M2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ELZ1	0.0	A0A3P6ELZ1_BRAOL; Uncharacterized protein
STRING	Bo7g041030.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	1e-112	Trihelix family protein