PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013595808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 266aa MW: 29886.4 Da PI: 6.6162 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.3 | 2.1e-18 | 175 | 208 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ + XP_013595808.1 175 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 208 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.1E-76 | 18 | 264 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 8.08E-15 | 168 | 230 | No hit | No description |
SMART | SM00401 | 5.7E-16 | 169 | 219 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.9E-14 | 172 | 206 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.952 | 173 | 205 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.54E-15 | 174 | 231 | No hit | No description |
Pfam | PF00320 | 4.9E-16 | 175 | 209 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 175 | 200 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MELWTEARAL KASLRGEAIK HQVTVSSEEL SRTSSAEDFS VECFLDFSEE GQEEKLVSVT 60 SSQEEQEQDC CIYSSQPCIF DQLPSLPDEY VEELEWVSRV VDDCSSPEVS LLLTQTHKIK 120 PNFSSSIPVK PRTKRSRNSL TGDRVWPLVS KNQHANGEHG RKEKKEIAVG FQRRCSHCGT 180 NNTPQWRTGP VGPKTLCNAC GVRFKSGRLC PEYRPADSPT FSSEIHSNLH RKVLELRKSK 240 VLVEETGEAT PKSDQVKFAS NAVDRT |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013595808.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352771 | 0.0 | AK352771.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-P20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595808.1 | 0.0 | PREDICTED: GATA transcription factor 3-like | ||||
Refseq | XP_013595811.1 | 0.0 | PREDICTED: GATA transcription factor 3-like | ||||
Swissprot | Q8L4M6 | 1e-137 | GATA3_ARATH; GATA transcription factor 3 | ||||
TrEMBL | A0A0D3DHQ1 | 0.0 | A0A0D3DHQ1_BRAOL; GATA transcription factor | ||||
STRING | Bo7g116990.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5739 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34680.2 | 1e-140 | GATA transcription factor 3 |
Publications ? help Back to Top | |||
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