PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013595802.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18708.1 Da PI: 7.7891 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.3 | 1.6e-44 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv++pyfpa++p+kfanvh++FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ +la XP_013595802.1 13 PCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPLHQRGDAVSSMVYEANARVRDPVYGCVGSISSLQQQIDVLQGQLA 107 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_013595802.1 108 LAQAE 112 99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.049 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-44 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE 60 LPLHQRGDAV SSMVYEANAR VRDPVYGCVG SISSLQQQID VLQGQLALAQ AEVVHLRVRH 120 STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGIFSHMDMV DEASLGESMW SC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-49 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-49 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013595802.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473839 | 1e-171 | AB473839.1 Arabidopsis thaliana ASL6 mRNA for ASYMMETRIC LEAVES2-like 6 protein, complete cds. | |||
GenBank | BT015067 | 1e-171 | BT015067.1 Arabidopsis thaliana At1g31320 gene, complete cds. | |||
GenBank | BT015665 | 1e-171 | BT015665.1 Arabidopsis thaliana At1g31320 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595802.1 | 1e-126 | PREDICTED: LOB domain-containing protein 4 | ||||
Refseq | XP_013695413.1 | 1e-126 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 1e-105 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A078INQ1 | 1e-124 | A0A078INQ1_BRANA; BnaCnng19520D protein | ||||
TrEMBL | A0A0D3D5L9 | 1e-124 | A0A0D3D5L9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EJ49 | 1e-124 | A0A3P6EJ49_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g041000.1 | 1e-125 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-103 | LOB domain-containing protein 4 |