PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013595741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 306aa MW: 34967.4 Da PI: 8.8066 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95 | 5.9e-30 | 179 | 232 | 3 | 56 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 r++W+++LH+rFv+a++++GGs++AtPk+i+++mkv+gLt++++kSHLQkYR++ XP_013595741.1 179 RRKWSEDLHRRFVDALQKIGGSQVATPKQIRDIMKVDGLTNDEIKSHLQKYRMH 232 99**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.03E-15 | 175 | 235 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-26 | 175 | 235 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.183 | 175 | 234 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-6 | 179 | 230 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-25 | 179 | 232 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MVQTDTDRRM GLNLNISHYS LAKPLSQFLN DVSKIKDNHS KLFEIDGYVG KLEEERKKID 60 VFKRELPLCM LLMNEAIERL KQEASSVQGV ELETDNKKNW MSSAQLWISN TNSQFQSTNE 120 EEDRCVTHNN ANQRGAILSF NVPPPPPPTA PLSLPTSEIL TDYSSRIEQS HPIQKKDVRR 180 KWSEDLHRRF VDALQKIGGS QVATPKQIRD IMKVDGLTND EIKSHLQKYR MHIRKHPLHP 240 AKILIASDQH GLLDRETQNL DSPQGPLVDR GCWFSNNGGH SSEEEEKSDG RSWRSGSRRK 300 RQGLGS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013595741.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595741.1 | 0.0 | PREDICTED: uncharacterized protein LOC106303925 | ||||
Refseq | XP_013705316.1 | 0.0 | transcription factor HHO5-like | ||||
Swissprot | F4JRB0 | 1e-125 | HHO5_ARATH; Transcription factor HHO5 | ||||
TrEMBL | A0A0D3DI28 | 0.0 | A0A0D3DI28_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g118260.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4922 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 1e-125 | G2-like family protein |
Publications ? help Back to Top | |||
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