PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595689.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 364aa    MW: 40442 Da    PI: 6.8655
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.45.5e-3065173389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................sss 68 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ak  +++l+ +                                
  XP_013595689.1  65 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEAAKDDVDKLPPLqfphgfnqmypnlffgnsgigesssstsaF-- 157
                     78*************************************************************555555544444444444333322222220.. PP

             TCP  69 saseceaesssssasnsssg..............k 89 
                                        +              +
  XP_013595689.1 158 -------------------PgtnlgflesydlggS 173
                     ...................1222444444444321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-2766193IPR005333Transcription factor, TCP
PROSITE profilePS5136929.71166124IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRSRDCDEKE IQAKQEGDHN ENNNHQVNLN NILQQQNQPS SLSSSRQWTS AFKNPRIVRV  60
SRTFGGKDRH SKVCTVRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLEAAKDD  120
VDKLPPLQFP HGFNQMYPNL FFGNSGIGES SSSTSAFPGT NLGFLESYDL GGSSSRTRSR  180
IQETPRESFN LDKGKWIKND ENADHHQDHG FDASHQHFSL TNPYNNSNAS SYYNLGHLQH  240
SLDQSGNNVT VAISNVPSNN NNNNLNLPPP SSAGDGSQLF FGPPPPAMSS LFPTYPSFLG  300
ASHHQHHHVV DGAGNLQLFS SNANTASQQQ MMTGNSSLIR PFHHLMSSNH DTDRHSSDDN  360
DSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1971125155Putative transcription factor PCF6
5zkt_B6e-1971125155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595689.10.0PREDICTED: transcription factor TCP5
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A0D3DDH50.0A0A0D3DDH5_BRAOL; Uncharacterized protein
STRINGBo7g098260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-149TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]