PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595674.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 29180.2 Da    PI: 7.9926
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_013595674.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box90.92.2e-30911741598
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL+ Le+qL++slk+iR+ +++++l+q+++lq ke++l+e+nk+Lr +l
  XP_013595674.1  91 LSSQQEYLKLKERYEALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRL 174
                     478*****************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-33277IPR002100Transcription factor, MADS-box
CDDcd002653.28E-45276No hitNo description
PRINTSPR004049.3E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.00990180IPR002487Transcription factor, K-box
PfamPF014861.3E-2492174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMIRTLERY QKCNYGPPEP NVPSREALAE LSSQQEYLKL KERYEALQRT QRNLLGEDLG  120
PLSTKELELL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLNETNKTL RLRLADGYQM  180
PLQLNPSQED HHVDYGRHDQ QQHSHHAFFQ PLECEPILQM GYQGHQNHGM EAGPSAINYM  240
LGWLPYDTSS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A9e-61751771104Developmental protein SEPALLATA 3
4ox0_B9e-61751771104Developmental protein SEPALLATA 3
4ox0_C9e-61751771104Developmental protein SEPALLATA 3
4ox0_D9e-61751771104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY086260.0Y08626.1 S.alba mRNA for MADS D protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595674.10.0PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4
SwissprotO040671e-178AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A0D3D6H70.0A0A0D3D6H7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F0490.0A0A3P6F049_BRAOL; Uncharacterized protein
STRINGBo7g050020.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-160MIKC_MADS family protein
Publications ? help Back to Top
  1. Bonhomme F,Sommer H,Bernier G,Jacqmard A
    Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis.
    Plant Mol. Biol., 1997. 34(4): p. 573-82
    [PMID:9247539]