PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013595651.1 | ||||||||
Common Name | 25.t00062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 307aa MW: 34612.9 Da PI: 5.2912 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 166 | 216 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g++++eIrdp+++g r++lg+f+ta eAa+a+++a+ +l+g XP_013595651.1 166 HYRGVRQRP-WGKFASEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 216 7********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-33 | 165 | 225 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-14 | 166 | 216 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 166 | 224 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-37 | 166 | 230 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 166 | 226 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.28E-32 | 166 | 224 | No hit | No description |
PRINTS | PR00367 | 1.2E-10 | 167 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 190 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MANPSEVSSA LWFIEKHLLD VVSPVAKDRW MIHESAAKDS SFDSSPMIFG SSSSSSAPID 60 CSESEIKPEV IDLSTPRFMD LISTPSEFNT GVSVSVSDFD FKPTFQTVNQ FEPEFKTQIP 120 CASDDSHSNR KPPLKISVPT KTEWIQFNPQ PEVTKPVQPD AEEQRHYRGV RQRPWGKFAS 180 EIRDPNKRGS RIWLGTFDTA IEAARAYDEA AFRLRGSKAI LNFPLEVGKW KSRKEADGEK 240 KRKRDEIEDD HVAVVEKVLK TEQSVNGKEA FNLTEFCDWD VMGLLNFPLL SPLSPHPSFG 300 YSQLTVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-30 | 165 | 227 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-30 | 165 | 227 | 4 | 66 | ATERF1 |
3gcc_A | 3e-30 | 165 | 227 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013595651.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183494 | 0.0 | AC183494.1 Brassica oleracea Contig C, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595651.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5 | ||||
Swissprot | O80341 | 1e-135 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0D3D9T2 | 0.0 | A0A0D3D9T2_BRAOL; Uncharacterized protein | ||||
TrEMBL | Q2A9R3 | 0.0 | Q2A9R3_BRAOL; Ethylene responsive element binding factor | ||||
STRING | Bo7g077410.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-107 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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