PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013595623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 177aa MW: 18963.6 Da PI: 10.2855 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58 | 1.2e-18 | 39 | 73 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt kTplWR gp g+k+LCnaCG++ rkk++ XP_013595623.1 39 CVDCGTNKTPLWRGGPAGPKSLCNACGIKSRKKRQ 73 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.7E-10 | 33 | 94 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.031 | 33 | 69 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.28E-12 | 34 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 37 | 73 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.37E-11 | 38 | 72 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 39 | 64 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.3E-16 | 39 | 73 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSMTEETKTT KLESAGDLSD VENGNCSSSG SGGDTKKTCV DCGTNKTPLW RGGPAGPKSL 60 CNACGIKSRK KRQAAHGIKQ EGNNNKIKNN KSSNDLALDN QTVKNGKGDS GNVKSKIKTV 120 TEDCNNSKKS VKGASRFLDF GFKVPVMKRS VVEKKRVWMK MGEEERAAVL LMALSCG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013595623.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189632 | 3e-85 | AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence. | |||
GenBank | AC232469 | 3e-85 | AC232469.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026A07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595623.1 | 1e-125 | PREDICTED: GATA transcription factor 17-like | ||||
Swissprot | Q9LIB5 | 2e-61 | GAT17_ARATH; GATA transcription factor 17 | ||||
TrEMBL | A0A0D3DEC2 | 1e-124 | A0A0D3DEC2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F981 | 1e-124 | A0A3P6F981_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g104200.1 | 1e-125 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13816 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16141.1 | 1e-69 | GATA family protein |
Publications ? help Back to Top | |||
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