PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595617.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 321aa    MW: 36264.1 Da    PI: 5.4419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.12.4e-55201461129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtdeel+++yL++kv ++ +++  +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nratk+gyWkatgkdke+++ 
  XP_013595617.1  20 LLPGFRFHPTDEELISHYLRPKVLNTLFST-LAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFK- 112
                     579************************999.67***************98999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lvg+kktLvfy+grap+g+kt+Wvmheyrle
  XP_013595617.1 113 EKSLVGMKKTLVFYEGRAPRGVKTNWVMHEYRLE 146
                     999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-6117170IPR003441NAC domain
PROSITE profilePS5100557.22620170IPR003441NAC domain
PfamPF023658.6E-3022145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDYEVSRTGE IVEDSEQIDL LPGFRFHPTD EELISHYLRP KVLNTLFSTL AIGEVDLNKV  60
EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATKAGY WKATGKDKEI FKEKSLVGMK  120
KTLVFYEGRA PRGVKTNWVM HEYRLEGMYA NDNLPVTAKN EWVISRVFQK GADGKKMHLY  180
GLTMLGSGIN QVEPAGLPPL MDSSPYPKSE SLSRVTCFSD QTTVEDKSHI SELKDECNVT  240
MLGSSSTQLI PNIGSLLHSD PLFMQDNSSI LNMLLDSEET QFKNIIQGLG TGENELTTSS  300
WHGHGLAGST GSVEVDCYWN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-521717614171NO APICAL MERISTEM PROTEIN
1ut4_B2e-521717614171NO APICAL MERISTEM PROTEIN
1ut7_A2e-521717614171NO APICAL MERISTEM PROTEIN
1ut7_B2e-521717614171NO APICAL MERISTEM PROTEIN
3swm_A2e-521717617174NAC domain-containing protein 19
3swm_B2e-521717617174NAC domain-containing protein 19
3swm_C2e-521717617174NAC domain-containing protein 19
3swm_D2e-521717617174NAC domain-containing protein 19
3swp_A2e-521717617174NAC domain-containing protein 19
3swp_B2e-521717617174NAC domain-containing protein 19
3swp_C2e-521717617174NAC domain-containing protein 19
3swp_D2e-521717617174NAC domain-containing protein 19
4dul_A2e-521717614171NAC domain-containing protein 19
4dul_B2e-521717614171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Age-dependent accumulation. First observed in young seedlings in cotyledons and regularly in the tip regions of very young leaves. Accumulates strongly in older leaf parts at the senescence onset. In flowers, present in mature organs such as old sepals, petals, old stamens, mature anthers, and pollen grains. Confined to floral organ abscission zone of mature flowers. Also observed in roots. {ECO:0000269|PubMed:21303842}.
UniprotTISSUE SPECIFICITY: Mostly expressed in root cortex, phloem, atrichoblast and quiescent center (QC), and, to a lower extent, in root endodermis, xylem, pericycle, columella and lateral root cap (LRC) (PubMed:16581911). Expressed in roots, cotyledons, very young leaves, senescing leaves, mature flowers and pollen (PubMed:21303842). {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:21303842}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595617.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382720.0KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595617.10.0PREDICTED: NAC domain-containing protein 59
SwissprotQ9LJW31e-159NAC59_ARATH; NAC domain-containing protein 59
TrEMBLA0A0D3DBG70.0A0A0D3DBG7_BRAOL; Uncharacterized protein
STRINGBo7g087220.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-161NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]