PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013595574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25222.1 Da PI: 8.7269 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.2 | 2.6e-28 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +P +Gavg++ +++++++q+ XP_013595574.1 2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATLFVAKFFGRAGLMSFISAVPELNRPALFQSLLFEACGRTVNPANGAVGILGAGNWHVCQA 96 6*********************9999777889*************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_013595574.1 97 AVETVLR 103 *998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.57 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-23 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATLFVA KFFGRAGLMS FISAVPELNR 60 PALFQSLLFE ACGRTVNPAN GAVGILGAGN WHVCQAAVET VLRGGTLRPI SDLLESPSLI 120 SSNYSSEICN DIGRFSTSRT KLSTSDMKKP PVNRKRSKAE RSESVMDVQL NHGLDLTIPV 180 VPVPLLPPTP FRKVVNGERP GSPSEESVTT SCCENGIIGY NKRERKLLNL FV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013595574.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473874 | 1e-126 | AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds. | |||
GenBank | AY072144 | 1e-126 | AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. | |||
GenBank | AY122976 | 1e-126 | AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595574.1 | 1e-170 | PREDICTED: LOB domain-containing protein 39-like | ||||
Refseq | XP_013705142.1 | 1e-170 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SZE8 | 1e-120 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A0D3DI60 | 1e-168 | A0A0D3DI60_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FD69 | 1e-169 | A0A3P6FD69_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g118580.1 | 1e-169 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-111 | LOB domain-containing protein 39 |