PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013595503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 296aa MW: 32684.4 Da PI: 7.4735 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.3 | 4.9e-19 | 210 | 244 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l XP_013595503.1 210 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 244 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.4E-96 | 1 | 296 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.82 | 204 | 240 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.7E-16 | 204 | 258 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-14 | 205 | 266 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-14 | 208 | 242 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.08E-14 | 209 | 257 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 210 | 235 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.9E-17 | 210 | 244 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MESVELSLTN METAVSADGA QNGDDFSVDD LLDFSSNDDV FFEDGAELET QRHKGVSVSL 60 NDETTLKRSN DFSTPCELAV PTDDLAELEW LSNFVDDSFT PYSAPTKKPV WLTGDRRHPL 120 TPVNAGSCFK APLPVKIRTK RPRTGVSLWF SRSPSLTNSS SSSATSSSSS GHSSPLWLSA 180 SEFLDEKAVK RQKKKKQFSS LEVQSQTRRC SHCGVQKTPQ WRAGPLGAKT LCNACGVRFK 240 SGRLLPEYRP ACSPTFSSEL HSNHHRKVIE MRQKKEMSGD ADEPGMNRTV QAVQSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00404 | DAP | Transfer from AT3G51080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013595503.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189627 | 0.0 | AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595502.1 | 0.0 | PREDICTED: GATA transcription factor 6-like | ||||
Refseq | XP_013595503.1 | 0.0 | PREDICTED: GATA transcription factor 6-like | ||||
Refseq | XP_013595504.1 | 0.0 | PREDICTED: GATA transcription factor 6-like | ||||
Swissprot | Q9SD38 | 1e-114 | GATA6_ARATH; GATA transcription factor 6 | ||||
TrEMBL | A0A0D3DDX4 | 0.0 | A0A0D3DDX4_BRAOL; GATA transcription factor | ||||
STRING | Bo7g100740.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51080.1 | 8e-95 | GATA transcription factor 6 |
Publications ? help Back to Top | |||
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