PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595370.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 240aa    MW: 26486.1 Da    PI: 7.6632
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260971.9e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg++++++++++q+
  XP_013595370.1   2 SCNGCRVLRKGCSETCILRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQA 96 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_013595370.1  97 AVETVLR 103
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2121107IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQC  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET VLRGGSLRPI PELLTRDGGF  120
PLATSDEVSE ICMEMMNDSG DRNVYHHSRF SSSRSRATAS PPKRRRLASE QQQQRPSSEL  180
DFSMVPAFPI KTTPFKEETR RPETPYSEES VTTAPFLDHI ASERFVRGGG ETTKLLNLFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166KRRRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595370.11e-179PREDICTED: LOB domain-containing protein 38
SwissprotQ9SN231e-127LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0D3DDR41e-178A0A0D3DDR4_BRAOL; Uncharacterized protein
STRINGBo7g099150.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-118LOB domain-containing protein 38