PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013595096.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 116aa MW: 13408.2 Da PI: 7.5935 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 66 | 8.9e-21 | 1 | 82 | 18 | 98 |
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +apy+p+++p kf vhk+FG++nv k+l++l+e+ e a+++l+yeAear++dP++G vg + +++ l++lk e++++ XP_013595096.1 1 MAPYLPSKEPDKFDRVHKVFGVENVYKILSRLEESWqSEYAVNALCYEAEARIHDPIHGYVGPQMIYNNILNNLKREIDSAI 82 59******************************88763799***********************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.1E-19 | 1 | 80 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 15.661 | 1 | 85 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MAPYLPSKEP DKFDRVHKVF GVENVYKILS RLEESWQSEY AVNALCYEAE ARIHDPIHGY 60 VGPQMIYNNI LNNLKREIDS AINELATQDL VVQWYYLREG RSAVRLAGRG RRAQGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-20 | 1 | 85 | 28 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-20 | 1 | 85 | 28 | 111 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013595096.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF101152 | 2e-41 | AF101152.2 Brassica napus clone na10 SINE S1 integration site sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595096.1 | 3e-82 | PREDICTED: LOB domain-containing protein 35-like | ||||
Swissprot | Q9FFL3 | 6e-20 | LBD35_ARATH; LOB domain-containing protein 35 | ||||
TrEMBL | A0A0D3DFG5 | 4e-81 | A0A0D3DFG5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g108130.1 | 6e-82 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35900.1 | 2e-22 | LOB domain-containing protein 35 |