PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013595095.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 22261.8 Da PI: 4.2103 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 73.9 | 3.1e-23 | 6 | 107 | 2 | 97 |
DUF260 2 CaaCkvlrr.kCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 C aC + ++ C+ + Cv+apyfp+++p kf vh +FG++nv+k+l++l ++ +re a+++l+yeAe+r++dP++G + + +++ l++l XP_013595095.1 6 CVACNFTNNgPCTlgngNACVMAPYFPSTEPDKFDRVHIVFGVENVCKILSRLeEPWQREYAANALCYEAEVRIHDPIHGYLVPQMVYNNILNNL 100 99***99987898554467**********************************55667************************9999999999999 PP DUF260 91 kaelall 97 k e++++ XP_013595095.1 101 KREIDSA 107 9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 5.6E-22 | 6 | 106 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 15.151 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDLPNCVACN FTNNGPCTLG NGNACVMAPY FPSTEPDKFD RVHIVFGVEN VCKILSRLEE 60 PWQREYAANA LCYEAEVRIH DPIHGYLVPQ MVYNNILNNL KREIDSAINE LSITMANVPQ 120 YSNLPIPSDF TEPSLFALIN EMLELNEDQK NQLRGLPDVD ARRNVDEIVG MRENDQGDVH 180 GADGASTSSG PSSGPPNQNQ P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-21 | 6 | 111 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-21 | 6 | 111 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013595095.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595095.1 | 1e-148 | PREDICTED: LOB domain-containing protein 32-like | ||||
TrEMBL | A0A0D3DFG2 | 1e-147 | A0A0D3DFG2_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g108100.1 | 1e-148 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35900.1 | 4e-37 | LOB domain-containing protein 35 |