PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013594988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 398aa MW: 44419.9 Da PI: 4.5697 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.0003 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H++ H XP_013594988.1 94 YTCQFCSKGFSTTQALGGHQNAH 116 9*******************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.25E-7 | 90 | 122 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-4 | 92 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.614 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MENEVMSSAS SSSPQPETSK DTIVAVEESN EKATENNNNL SLVPSDQEVM SERRSENPSL 60 GSERGSENPS LGSGAVRTGT EMTMLYPSRS NKIYTCQFCS KGFSTTQALG GHQNAHKHDR 120 EWEKKRKEME EDFPGLSFLN RYIDKPHLLL GGYSEDALSN DNHLGITLES FKRRGSGGVY 180 PSFNSGVGPM NMIAPRMAPT RFFTRNTFTD GSSSRGLGPR PTYAPMFPRN VPPFLRPRST 240 NLPRNLYPQG NRVGEKDNVV VIDDDDDEPD EDNPKSWDIV HFTIRKKKLK KKEFVMENQV 300 VSSASSSAPQ PEICESIIVA VEESKEKAAE NNNRGQENPL SEEDNVVEID DDDDDDDDGD 360 DEAEEAGGTL LSEGCLTLFH FIVYRFKRSC VCIFSRYI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 292 | RKKKLKKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013594988.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594988.1 | 0.0 | PREDICTED: uncharacterized protein LOC106303204 | ||||
TrEMBL | A0A0D3DCI3 | 0.0 | A0A0D3DCI3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EH55 | 0.0 | A0A3P6EH55_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g094840.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 6e-75 | C2H2 family protein |