PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594912.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 357aa    MW: 40187.5 Da    PI: 7.1466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05198217120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_013594912.1 198 FSCPLCFKTFNRYNNMQMHM 217
                     89*****************9 PP
2zf-C2H2130.00032282304123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  k + ++H +++
  XP_013594912.1 282 FACRRCGKAFAVKGDWRTHEKNC 304
                     78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-5198217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66198225IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
SuperFamilySSF576673.75E-6268302No hitNo description
Gene3DG3DSA:3.30.160.609.9E-6269302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767282302IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSDPACIFSN GFLDNYDYSF NYSTSLSHIY NSNGSFYSSN TTKINPNSTS PDSPPLREAL  60
PLLSLSPIHK HKAASVSHHE YYFMETTEQS STNFLDHDLG QCQETQHHDV TVDLHLGLTN  120
LGGDAIACGG GGSSSSDAIL DSTDQEHHHD LHQDRHQYPE VEVTLVSDHD GHGGVQRGIH  180
HHYWIPTPSQ ILMGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML  240
RLSCYCCAPG CKNNIHHPRA RPLKDFRTLQ THYKRKHGAR PFACRRCGKA FAVKGDWRTH  300
EKNCGKLWYC SCGSDFKHKR SLKDHVKAFG NGHVPCFGND CFGDHEDEAA SDVEHQE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118111e-177AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594912.10.0PREDICTED: zinc finger protein WIP4-like
RefseqXP_013682397.10.0zinc finger protein WIP4-like
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A0D3ABZ70.0A0A0D3ABZ7_BRAOL; Uncharacterized protein
STRINGBo1g108560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]