PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013594762.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 283aa MW: 33034.4 Da PI: 6.5223

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013594762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75	9.2e-24	151	200	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s e+++ yF++pi++AAkeL+v+lT+LK++ R++GI+RWPhRk+ s+ XP_013594762.1 151 KSLSREEIKPYFYMPITKAAKELNVGLTLLKKKSRELGISRWPHRKLMSI 200 789********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.142	135	220	IPR003035	RWP-RK domain
Pfam	PF02042	5.3E-20	153	200	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MTDHKQLQNW SQFDDYEFIQ EENLFSLFDH SLSFDYNSSI NNPLSDIQTQ TWFSVQDIIN 60 VDPLSTRFSA GDHTFMASDD LEAISTFSQD VFSGSWNEIT GNFNNHFEPI RDEISSIGIP 120 NMEMILHESN NTMKEITCYK RRERTDGVLV KSLSREEIKP YFYMPITKAA KELNVGLTLL 180 KKKSRELGIS RWPHRKLMSI QGIITNLLDH LGKTEDERIR SKVTKALKIL EREKKMIEED 240 PNLEFGDETK RLRQACFKAN YKRRRLLSIS NTSFFSESKS LHV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	265	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013594762.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013594762.1	0.0	PREDICTED: protein RKD3-like
Refseq	XP_013689678.1	0.0	protein RKD3-like
Swissprot	Q9FGD1	7e-97	RKD3_ARATH; Protein RKD3
TrEMBL	A0A0D3D8A1	0.0	A0A0D3D8A1_BRAOL; Uncharacterized protein
STRING	Bo7g064180.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	3e-99	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]