PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594714.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 280aa    MW: 32379.8 Da    PI: 5.977
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594714.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-1792144456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  XP_013594714.1  92 KKRLQLEQVKVLEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 144
                     4457889*********************************************9 PP
2HD-ZIP_I/II108.16.2e-3590179189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkd.yeaLkraydalkeenerLekeveeLre 89 
                     ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+d +e+L +  d+l +++++L +ev +L++
  XP_013594714.1  90 EKKKRLQLEQVKVLEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDxFESLISDNDSLLAHKKKLLAEVMSLKN 179
                     69**********************************************************98789********************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-1888148IPR009057Homeodomain-like
SMARTSM003893.0E-1689150IPR001356Homeobox domain
PROSITE profilePS5007115.98590146IPR001356Homeobox domain
CDDcd000861.21E-1591147No hitNo description
PfamPF000469.7E-1592144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-1898146IPR009057Homeodomain-like
PRINTSPR000313.0E-5117126IPR000047Helix-turn-helix motif
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PRINTSPR000313.0E-5126142IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MYLFDPTADA AAGFSLEMAF PQHAFMFQQR HEDNSHDQLP SCPPPHLFNG GGNYMMNRSM  60
SLMNVQEDHH QSVDHEENLS DDGEHMMLGE KKKRLQLEQV KVLEKSFELG NKLEPERKIQ  120
LAKALGMQPR QIAIWFQNRR ARWKTRQLER DXFESLISDN DSLLAHKKKL LAEVMSLKNN  180
DCNEGSIIKR EAEASWSNNG SIENSSDINL EIPRETTTTH VSTIKDLFPS SIRASTHHRQ  240
NHEMVQEESL CNMFNGIDET TTDGYWAWSD PNHNNHRQFN
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594714.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288901e-129AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876311e-129AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292211e-129BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594714.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT01e-168ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A3P5ZRK40.0A0A3P5ZRK4_BRACM; Uncharacterized protein (Fragment)
STRINGBo1g158730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-170homeobox protein 20