PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013594619.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Whirly | ||||||||
Protein Properties | Length: 226aa MW: 24196.2 Da PI: 8.6382 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 68.6 | 1.1e-21 | 119 | 183 | 1 | 66 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelv 66 s+ k+kaal+v+++ p+f +ldsg++kl+++G+lll++a+a+++r+ydW+kk++ + s e++e v XP_013594619.1 119 SISKGKAALTVEPKTPEFASLDSGAFKLSKDGFLLLQFAPAAGVRQYDWSKKGETVES-DEISEEV 183 689*************************************************986544.4666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.4E-22 | 109 | 171 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.12E-19 | 113 | 171 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.3E-17 | 121 | 172 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVLLPSQSAS YHHSSNTPSQ TYPNQALEIS SLKQSFVSHN GNALCFSSSR LLSSSSSVLV 60 AGGGLAVKRH GLASKPVRTV NLSVKSRQTD YFEKQRFGDS SSSSQNGEGG PARFYVGHSI 120 SKGKAALTVE PKTPEFASLD SGAFKLSKDG FLLLQFAPAA GVRQYDWSKK GETVESDEIS 180 EEVYLPLKES IGHTEVEVIA GALFGFLVSF GVYSLMSKLP TLYVGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 7e-33 | 107 | 170 | 2 | 65 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 7e-33 | 107 | 170 | 2 | 65 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 7e-33 | 107 | 170 | 2 | 65 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 7e-33 | 107 | 170 | 2 | 65 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.4619 | 1e-162 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013594619.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594619.1 | 1e-164 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 2e-57 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A0D3D5Z7 | 1e-120 | A0A0D3D5Z7_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g045250.1 | 1e-121 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 9e-54 | ssDNA-binding transcriptional regulator |