PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594354.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 305aa    MW: 35299.7 Da    PI: 9.7502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-06242264123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp+C+ +F+++  +  H+++H
  XP_013594354.1 242 YTCPKCNSVFNTSKKFAAHMSSH 264
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0019242264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66242269IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSSNPNRFSS YGDDNTNYHG FVPNFKNHNS KTTRSIFTTS DHMNHRGLFS SCPSFSCYQN  60
SHVSSSSFGL NNSYMNYHMR SESDSVLGVN CFPMTNNPLY SQVSFTQTIT NRFSAIVPSN  120
QIYNIQNDIA RVQHDMDFKT NMWNRPTSYR PTFLDKNCGI LNPKPVNAIP RQDSPYRQHL  180
DMFSSSSKYN HDRHVLQEGQ SSRKSPKPNK SHDYNSDEDG RSXDVQYDGR THSFPYEKYG  240
PYTCPKCNSV FNTSKKFAAH MSSHYKNETK KERDERYRAR IKNKYHKLSS NIHGGSKKIK  300
LEAME
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594354.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106302379
TrEMBLA0A3P6EC890.0A0A3P6EC89_BRAOL; Uncharacterized protein
STRINGA0A087HDL41e-115(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.11e-99C2H2 family protein