PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013594213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 132aa MW: 14620.5 Da PI: 7.2063 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.5 | 6.6e-45 | 12 | 110 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyfp e+pkkfanvh++FGasnv+k+l+++++++reda++sl+yeAear+rdPvyG+vg i+ lq+q+ l++el+ XP_013594213.1 12 PCAACKFLRRKCTSDCVFAPYFPPEEPKKFANVHRIFGASNVSKILQEVEPHQREDAVNSLAYEAEARLRDPVYGCVGAISVLQRQVLGLQSELE 106 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_013594213.1 107 ETNA 110 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.56 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-44 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MSSSYSNYTN SPCAACKFLR RKCTSDCVFA PYFPPEEPKK FANVHRIFGA SNVSKILQEV 60 EPHQREDAVN SLAYEAEARL RDPVYGCVGA ISVLQRQVLG LQSELEETNA DIMRYASCLG 120 GETTSVYGAR RG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-58 | 10 | 126 | 9 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-58 | 10 | 126 | 9 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013594213.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594213.1 | 4e-95 | PREDICTED: LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 7e-85 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A0D3DBD0 | 1e-93 | A0A0D3DBD0_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g085860.1 | 2e-94 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-87 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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