PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594200.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 189aa    MW: 21297.2 Da    PI: 9.9811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19555155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    ++++GVr++  +g+Wv+eIr+p        +r++lg+f taeeAaka+++a+  ++g
  XP_013594200.1  5 KKFRGVRQRQ-WGSWVSEIRHP-----LfkRRVWLGTFNTAEEAAKAYDQAAVIMNG 55
                    59*****999.**********7.....335*********************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-31564No hitNo description
Gene3DG3DSA:3.30.730.101.3E-31663IPR001471AP2/ERF domain
SMARTSM003801.6E-36669IPR001471AP2/ERF domain
PROSITE profilePS5103221.456663IPR001471AP2/ERF domain
PfamPF008479.3E-12650IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-20664IPR016177DNA-binding domain
PRINTSPR003672.4E-10718IPR001471AP2/ERF domain
PRINTSPR003672.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MVHSKKFRGV RQRQWGSWVS EIRHPLFKRR VWLGTFNTAE EAAKAYDQAA VIMNGQNAKT  60
NFPVIKSNDS DSSDINSLSR SPKSLSEHLN AKLRKNCKGQ TPYLTCLRLD NDSSHIGVWQ  120
KRAGPKTTQN WVKLVELSDG VNARAGDVGI NKMKKKIDDV EEEDQMAMQM IEELLNWTCP  180
ASASISGLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-176631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594200.11e-141PREDICTED: ethylene-responsive transcription factor SHINE 3
SwissprotQ3E9581e-111SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0D3DCU91e-139A0A0D3DCU9_BRAOL; Uncharacterized protein
STRINGBo7g096000.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.21e-96ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]