PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594113.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 450aa    MW: 51350.7 Da    PI: 6.5606
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.8e-093684061854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  XP_013594113.1 368 MFQNflHPYPTDSEKHLLAIRSGLTRSQVSNWFINARVR 406
                     5887779******************************88 PP
2BELL88.66.7e-29243313172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r++l++kk++Ll+ll++Vd++Y+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i
  XP_013594113.1 243 QRRALEAKKTQLLDLLQMVDDKYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERISKKI 313
                     6899*****************************************.***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.7E-40174311IPR006563POX domain
PfamPF075261.3E-27179310IPR006563POX domain
PROSITE profilePS5007111.402347410IPR001356Homeobox domain
CDDcd000869.79E-11350411No hitNo description
SMARTSM003892.6E-6350414IPR001356Homeobox domain
SuperFamilySSF466891.41E-15351419IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-26353416IPR009057Homeodomain-like
PfamPF059205.0E-15367406IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDNDNTFSSL GSVMTNQNNL LMDLIPSRED STSFSTMLPW NSMRSDPLQM GGFDIFSSFL  60
TNKYLSSTSS SINVQENFEV MAPPPLPPFH HLDHLRPYDD SSNNMWSLGE NSGFHAYSYV  120
EGVVGPSEPI ASTFAEEDVS DECSEISPYA ATKMTSEQAL TSEQASSSSK DIYNNVSHVI  180
FGSKYLHSVQ EILSQFATYS LHGLENNPQC YFSSQETESR AAGSAFTSRL ENQTEFLEGG  240
FDQRRALEAK KTQLLDLLQM VDDKYSHCVD EIHTVVSAFH AATELDPQLH TRFALQTISF  300
LYKNLRERIS KKILMMGSVL ERGKEKSQEN SIIHQHCLLQ QMKHKNHQIW RPQRGLPEKS  360
VSVLRTWMFQ NFLHPYPTDS EKHLLAIRSG LTRSQVSNWF INARVRLWKP MIEEMYAEMN  420
KRKLNNTQLQ GNGGSRRIPK SIMMSQERNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-14356414563Homeobox protein Meis2
3k2a_B4e-14356414563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594113.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895650.0AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594110.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_013594111.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_013594112.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_013594113.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_013594114.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_013594115.10.0PREDICTED: homeobox protein ATH1-like
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A0D3DHE80.0A0A0D3DHE8_BRAOL; Uncharacterized protein
STRINGBo7g115960.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]