PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013594069.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 382aa MW: 43245.9 Da PI: 6.7938

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013594069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.9	8.5e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR+ngilKKA+ELSvLCd++ +++fs+tgk XP_013594069.1 10 KLENTAGRQATFAKRKNGILKKASELSVLCDIDLVLLMFSPTGK 53 679***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.039	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-28	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.71E-25	2	81	No hit	No description
SuperFamily	SSF55455	1.29E-24	2	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.4E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MGRVKLKIKK LENTAGRQAT FAKRKNGILK KASELSVLCD IDLVLLMFSP TGKPSLCCAQ 60 RSIEKVIAKF SQVTPEERAK RKIEGLEVLK KTFQKLDHHV NIRDFIFSSN PTTEDLSARA 120 RILQDRISEI HGRLRYWTEP DKINNVEDLG QLEISIRQSL DQLRAHKEHF GQQQHAMQIE 180 NANFVKDWST SLLQDGIQIP LEQQLQSMPW ILNTNTTNIV TEEHNSIPQR EVECSASSSF 240 GSYPGYFGTG KSPEITISGQ DTSFLDDLTN GHLKPQTITQ QQFTENSVIP YIPSLQNDLN 300 HHQTLPLPLP HPPPVFNFPM NQREYHMNGF FEAPPPGSSV YNNTANQARF GSNSSSLPCS 360 ISMLDEYLFS QIQQEEVVLQ SS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MGRVKLKIKK LENTAGRQAT FAKRKNGILK KASELSVLCD IDLVLLMFSP TGKPSLCCAQ  60
RSIEKVIAKF SQVTPEERAK RKIEGLEVLK KTFQKLDHHV NIRDFIFSSN PTTEDLSARA  120
RILQDRISEI HGRLRYWTEP DKINNVEDLG QLEISIRQSL DQLRAHKEHF GQQQHAMQIE  180
NANFVKDWST SLLQDGIQIP LEQQLQSMPW ILNTNTTNIV TEEHNSIPQR EVECSASSSF  240
GSYPGYFGTG KSPEITISGQ DTSFLDDLTN GHLKPQTITQ QQFTENSVIP YIPSLQNDLN  300
HHQTLPLPLP HPPPVFNFPM NQREYHMNGF FEAPPPGSSV YNNTANQARF GSNSSSLPCS  360
ISMLDEYLFS QIQQEEVVLQ SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-12	1	91	1	90	MEF2 CHIMERA
6byy_B	1e-12	1	91	1	90	MEF2 CHIMERA
6byy_C	1e-12	1	91	1	90	MEF2 CHIMERA
6byy_D	1e-12	1	91	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013594069.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013594069.1	0.0	PREDICTED: MADS-box transcription factor 50 isoform X2
Swissprot	Q1PFA4	0.0	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A0D3DAI1	0.0	A0A0D3DAI1_BRAOL; Uncharacterized protein
STRING	Bo7g080890.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	0.0	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]