PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594068.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 383aa    MW: 43332.9 Da    PI: 6.7938
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.98.6e-211053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + en+  rq tf+kR+ngilKKA+ELSvLCd++  +++fs+tgk
  XP_013594068.1 10 KLENTAGRQATFAKRKNGILKKASELSVLCDIDLVLLMFSPTGK 53
                    679***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.039153IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-24293IPR002100Transcription factor, MADS-box
CDDcd002661.81E-24282No hitNo description
PRINTSPR004041.4E-17323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGRVKLKIKK LENTAGRQAT FAKRKNGILK KASELSVLCD IDLVLLMFSP TGKPSLCCAQ  60
RSSIEKVIAK FSQVTPEERA KRKIEGLEVL KKTFQKLDHH VNIRDFIFSS NPTTEDLSAR  120
ARILQDRISE IHGRLRYWTE PDKINNVEDL GQLEISIRQS LDQLRAHKEH FGQQQHAMQI  180
ENANFVKDWS TSLLQDGIQI PLEQQLQSMP WILNTNTTNI VTEEHNSIPQ REVECSASSS  240
FGSYPGYFGT GKSPEITISG QDTSFLDDLT NGHLKPQTIT QQQFTENSVI PYIPSLQNDL  300
NHHQTLPLPL PHPPPVFNFP MNQREYHMNG FFEAPPPGSS VYNNTANQAR FGSNSSSLPC  360
SISMLDEYLF SQIQQEEVVL QSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-13192190MEF2 CHIMERA
6byy_B9e-13192190MEF2 CHIMERA
6byy_C9e-13192190MEF2 CHIMERA
6byy_D9e-13192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594068.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594068.10.0PREDICTED: MADS-box transcription factor 50 isoform X1
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0D3DAI10.0A0A0D3DAI1_BRAOL; Uncharacterized protein
STRINGBo7g080890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.20.0AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]