PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013593965.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 468aa MW: 54182.4 Da PI: 9.5409

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013593965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	73.7	3.5e-23	46	132	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 ++r+w+eeDe+++L+Gl+d++a++g +p +++ +fy+f+ +si k+sk+q+++Kir+LK K ++k +++++++f lsk+iW XP_013593965.1 46 SSRIWNEEDELTVLKGLVDYQAQKGIEPRSNWADFYRFLGgGSITGKFSKEQVLSKIRKLKAKLIASMQK---------GNTSQSEAFLLSKRIW 131 78**********************************96369*************************.........4556678999999999 PP DUF573 97 g 97 g XP_013593965.1 132 G 132 7 PP
2	DUF573	77.8	1.8e-24	264	355	6	97
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +w+ +D +++L+G++++++++g + +d+d fy + k+ i++ +sk+ql+e +++LK +f+ ++++k+gk++sf+++ +++ f ls +iW XP_013593965.1 264 IWNMNDVLLILKGIVEYENERGFRYNSDWDIFYGYTKDLINIPFSKKQLMEEVKKLKMRFNFYSQRSKDGKQFSFTNSYEKELFRLSTIIWA 355 8******************************************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.0E-17	47	132	IPR007592	Protein of unknown function DUF573
Pfam	PF04504	1.2E-17	264	354	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MVNLDLPDRT SPPSHILRSR KSKSPGKHAS KPSPPEPEHV TKKNSSSRIW NEEDELTVLK 60 GLVDYQAQKG IEPRSNWADF YRFLGGGSIT GKFSKEQVLS KIRKLKAKLI ASMQKGNTSQ 120 SEAFLLSKRI WGLQNESDQS ANHTKSAEEM ANHEPSNNEV TKADNDESSS AVRDAFETMV 180 SKGLSDYQKK LQLEKLMNLG SGKRKELSDE WNELCAEEVK LNIKRLKFSA MLAEAAKWKH 240 EDDENVSYTE AIVRRRKQQK KYLIWNMNDV LLILKGIVEY ENERGFRYNS DWDIFYGYTK 300 DLINIPFSKK QLMEEVKKLK MRFNFYSQRS KDGKQFSFTN SYEKELFRLS TIIWAKNETE 360 DTFSENRQDQ AKDVPLVKQK RVNDTRMDKD KSEELGVMDE FDALQDALEA STSFQILGKT 420 QQKMLFQNLK TLGAQRRKEL AGEWKSLLNE EMELHMKKLT FFAQLSCA

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MVNLDLPDRT SPPSHILRSR KSKSPGKHAS KPSPPEPEHV TKKNSSSRIW NEEDELTVLK  60
GLVDYQAQKG IEPRSNWADF YRFLGGGSIT GKFSKEQVLS KIRKLKAKLI ASMQKGNTSQ  120
SEAFLLSKRI WGLQNESDQS ANHTKSAEEM ANHEPSNNEV TKADNDESSS AVRDAFETMV  180
SKGLSDYQKK LQLEKLMNLG SGKRKELSDE WNELCAEEVK LNIKRLKFSA MLAEAAKWKH  240
EDDENVSYTE AIVRRRKQQK KYLIWNMNDV LLILKGIVEY ENERGFRYNS DWDIFYGYTK  300
DLINIPFSKK QLMEEVKKLK MRFNFYSQRS KDGKQFSFTN SYEKELFRLS TIIWAKNETE  360
DTFSENRQDQ AKDVPLVKQK RVNDTRMDKD KSEELGVMDE FDALQDALEA STSFQILGKT  420
QQKMLFQNLK TLGAQRRKEL AGEWKSLLNE EMELHMKKLT FFAQLSCA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.4664	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013593965.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593965.1	0.0	PREDICTED: uncharacterized protein LOC106302008 isoform X2
TrEMBL	A0A0D3D5U0	0.0	A0A0D3D5U0_BRAOL; Uncharacterized protein
STRING	Bo7g043690.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	1e-52	DNA-binding storekeeper protein-related transcriptional regulator