PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 28528.6 Da PI: 5.2678 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 101 | 151 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+++ a eAa+a+++a+ +l+g XP_013593822.1 101 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDRAVEAARAYDQAAFQLRG 151 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 100 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 101 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.131 | 101 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-36 | 101 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 101 | 161 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.36E-29 | 101 | 159 | No hit | No description |
PRINTS | PR00367 | 3.3E-13 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-13 | 141 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MATKQESLAI EFISQHLLTD FASTETEPSS FTLHETGPSL FTSQVHDYQL ETSSTTINNQ 60 NHKPNSTLNR RKPPLPNLSV SRTVSGTVKK TEEEEGEEER HYRGVRRRPW GKYAAEIRDP 120 NKKGSRIWLG TYDRAVEAAR AYDQAAFQLR GRKAILNFPL DVRATSESFL EEGVNGKRKR 180 VKSSPAVEED EKAVAVRVKV EEEESDTTET TEAEVEAVPL TPSSWMGFWD VGAGDGIFSV 240 PPLSPTSPNF SVISVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-27 | 96 | 159 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00572 | DAP | Transfer from AT5G61600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593822.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593822.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF104 | ||||
Refseq | XP_013693230.1 | 0.0 | ethylene-responsive transcription factor ERF104-like | ||||
Swissprot | Q9FKG1 | 1e-118 | EF104_ARATH; Ethylene-responsive transcription factor ERF104 | ||||
TrEMBL | A0A0D3DDN5 | 0.0 | A0A0D3DDN5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g098860.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13464 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61600.1 | 1e-100 | ethylene response factor 104 |
Publications ? help Back to Top | |||
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