PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593815.1
Common Name25.t00036
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 274aa    MW: 30898.7 Da    PI: 8.3843
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-18121175256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q   Le  F+++++++ +++  LAkkl+Lt rqV vWFqNrRa+ k
  XP_013593815.1 121 RKKLRLSKDQSAFLEGTFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 175
                     788899***********************************************98 PP
2HD-ZIP_I/II120.11.2e-38121210191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LE +F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke  eLr +l
  XP_013593815.1 121 RKKLRLSKDQSAFLEGTFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELR-TL 210
                     69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.3E-18291IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.4E-1899178IPR009057Homeodomain-like
SuperFamilySSF466891.58E-18104178IPR009057Homeodomain-like
PROSITE profilePS5007116.989117177IPR001356Homeobox domain
SMARTSM003891.5E-15119181IPR001356Homeobox domain
PfamPF000461.7E-15121175IPR001356Homeobox domain
CDDcd000865.86E-15121178No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
PfamPF021833.9E-8177210IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-23177220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMMRKEDLGL SLSLGLSQDH TPLQSQNPNS SISNNLHRFP WNQTFASTSD LGKIDVNSLP  60
RTVDCEEEPG VSSPNSTISS TISGGKRSER EGISEHDEIT PDRGYSRGNS DEEEDGGETS  120
RKKLRLSKDQ SAFLEGTFKE HNTLNPKQKL ALAKKLNLTA RQVEVWFQNR RARTKLKQTE  180
VDCEYLKRCV EKLTEENRRL QKEAMELRTL KLSPQFYGQM TPPTTLIMCP SCERVAGPSS  240
NHQHNHRPVP VNPWVACAGQ VTHGLNFEAL RPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125SRKKLRL
2169177RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.153380.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593815.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834941e-172AC183494.1 Brassica oleracea Contig C, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593815.10.0PREDICTED: homeobox-leucine zipper protein HAT2
SwissprotP466011e-178HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A0D3D9U70.0A0A0D3D9U7_BRAOL; Uncharacterized protein
TrEMBLQ2A9S30.0Q2A9S3_BRAOL; Homeobox-leucine zipper protein, putative
STRINGBo7g077560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-137Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]